First, make the crust. Put the flour and salt in the bowl of a food processor and pulse once to blend. then drop in the chopped cold butter and pulse in little bursts until the dough is the consistency of cornmeal. Add the cold water, a tablespoon at a time, pulsing quickly, until the dough just starts to form a ball. If you see little bits of butter remaining, that's okay. That means your pastry will be even flakier. (You can also make the dough by hand without a food processor—see Kitchen Notes.)
Turn the dough out onto a lightly floured surface, form into a ball, and flatten it a bit with the heel of your hand. Wrap in plastic film and put in the fridge for 20 or 30 minutes.
Take the chilled dough out of its wrapper and roll it out pretty thinly on a floured surface. Using a 4-inch round pastry cutter, or something else of about that diameter (we used a big coffee mug), cut out at least 12 circles, Place each circle in one of the muffin tin cups and lightly press into place. It’s okay if the edges are rough and not perfectly crimped. Also, no need to grease the muffin tin—the dough has so much butter, it won’t stick. If you happen to have more than 12 circles, use your backup tin.
Next, make the filling. First, preheat the oven to 400ºF. Then in a medium bowl, beat the three eggs just until they are uniformly bright yellow. Pour in the half and half, add the nutmeg, salt and black pepper, and stir until all is uniform.
Evenly parse out the cheeses among the muffin tins. If you are adding a little ham, this is the point to add it—just drop a pinch of the cubed ham bits into each cup. Next, using a large spoon, add the egg mixture to each tin. Don't fill the individual cups all the way to the top— go with slightly lower than the top edge. If you are including a bit of parsley, add it now, sprinkling just a bit on top.
Slide the tin (or tins) into the hot oven and bake for about 23-30 minutes (depending on the nuances of your oven). These are done when the filling is set and the top is puffy and golden-brown. Take the tins out of the oven and let them cool on a rack. Each individual Chäschüechli should easily pop out of its cup with the help of a table knife. These are lovely served warm or room temperature.